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Analysis of codon usage patterns in “Lonicerae Flos” (Lonicera macranthoides Hand. -Mazz.) based on transcriptome data

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成果类型:
期刊论文
作者:
Liu, Sisi;Qiao, Zhongquan;Wang, Xiaoming*;Zeng, Huijie;Li, Yongxin;...
通讯作者:
Wang, Xiaoming
作者机构:
[Chen, Yi; Zeng, Huijie; Cai, Neng; Liu, Sisi; Wang, Xiaoming; Li, Yongxin; Qiao, Zhongquan] Hunan Acad Forestry, Changsha 410004, Hunan, Peoples R China.
[Liu, Sisi] Hunan Univ Tradit Chinese Med, Changsha 410208, Hunan, Peoples R China.
通讯机构:
[Wang, Xiaoming] H
Hunan Acad Forestry, Changsha 410004, Hunan, Peoples R China.
语种:
英文
关键词:
Codon usage bias;Lonicera macranthoides;Lonicerae Flos;Transcriptome
期刊:
Gene
ISSN:
0378-1119
年:
2019
卷:
705
页码:
127-132
基金类别:
Hunan Provincial Natural Science FoundationNatural Science Foundation of Hunan Province [2018JJ3280]; China Postdoctoral Science FoundationChina Postdoctoral Science Foundation [2018M632964]
机构署名:
本校为其他机构
摘要:
Lonicera macranthoides Hand. -Mazz. is an important medicinal and economical plant in China, however, the codon usage bias (CUB) in L. macranthoides genes is still unknown. In this study, L. macranthoides transcriptome sequencing has been completed, and codon usage patterns in 36,090 reconstructed genes from the L. macranthoides transcriptome were examined. The mean GC content and GC3 value is 44.9% and 43.1%, respectively, which indicates that nucleotide contents of L. macranthoides genome is somewhat AT rich, and its codon bias pattern tends to use A/T-ending codons. According to neutrality ...

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