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A Novel Informative SNPs Selection Method Based on Genetic Algorithm

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成果类型:
期刊论文
作者:
Li, Man;Cao, Zhi*;Li, Xiong;Chen, Haowen
通讯作者:
Cao, Zhi
作者机构:
[Li, Xiong; Cao, Zhi; Chen, Haowen; Li, Man] Hunan Univ, Coll Informat Sci & Engn, Changsha 410082, Hunan, Peoples R China.
[Li, Man] Hunan Univ Chinese Med, Coll Management & Informat Engn, Changsha 410208, Hunan, Peoples R China.
通讯机构:
[Cao, Zhi] H
Hunan Univ, Coll Informat Sci & Engn, Changsha 410082, Hunan, Peoples R China.
语种:
英文
关键词:
Single Nucleotide Polymorphism;tagSNPs;Genetic Algorithm;Artificial Neural Network
期刊:
Journal of Computational and Theoretical Nanoscience
ISSN:
1546-1955
年:
2014
卷:
11
期:
10
页码:
2109-2114
基金类别:
National Nature Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [61300128]; Planned Science and Technology Project of Hunan Province [2011FJ3123]; Doctoral Fund of Ministry of Education of ChinaMinistry of Education, China [20110161120014]
机构署名:
本校为其他机构
院系归属:
信息科学与工程学院
摘要:
Currently, many approaches have been developed to be applied in the tagSNP selection research. However, there are still drawbacks existing in these methods, manifested chiefly by high time complexity, large number of selected tagSNPs, low prediction accuracy and inefficient tagSNPs in followup study. We propose an informative SNP selection method framework based on genetic algorithm in this paper to address these problems. In this study, we separately improve the phases of informative SNPs set construction and haplotypes reconstruction. Firstly, we eliminate the large number of redundant SNPs ...

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